api: Move the API package to a dedicated subdirectory.
In order to keep all three packages (zulip, zulip_bots, zulip_botserver) in the same repo, all package files must now be nested one level deeper. For instance, python-zulip-api/zulip_bots/zulip_bots/bots/, instead of python-zulip-api/zulip_bots/bots/.
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zulip/integrations/zephyr/zephyr_mirror_backend.py
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zulip/integrations/zephyr/zephyr_mirror_backend.py
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